īut I still get 6 warning messages when I try to install Deseq2 again: 1: In install.packages(. Then, I installed libxml2-dev (sudo apt install libxml2-dev) and libcurl4-openssl-dev (sudo apt install libcurl4-openssl-dev) as suggested here. Here are the error messages that I am getting back: > install.packages ('RCurl') Installing package into ‘/home/steven/R/x8664-pc-linux. This is pretty much the same question that was asked right here just a year later and a different OS. Installation of package ‘DESeq2’ had non-zero exit status I am unable to install 'XML' which is required for the use of rattle. Installation of package ‘geneplotter’ had non-zero exit status I'm not familiar with redhat, but I guess it should be in whatever packaging system it uses. If you are running a debian flavor, you can get it from aptitude. I am using R version 3.6.1 : > install.packages ('XML') Installing package into ‘/home/juri. Installation of package ‘genefilter’ had non-zero exit status You need to have the libxml2 package installed on your system. I can not install XML package on R-Studio Pro. If the installation is successful, it will return a status of 0 an unsuccessful operation will return a non-zero number. Installation of package ‘annotate’ had non-zero exit status Installation of package ‘SummarizedExperiment’ had non-zero exit status Installation of package ‘GenomicRanges’ had non-zero exit status However I'm getting the following warnings when the script ends: Warning messages: 1: In install.packages (update instlib l, 'Package', l, contriburl contriburl, : installation of package ‘agricolae’ had non-zero exit status 2: In install.packages (update instlib l, 'Package', l, contriburl contriburl, : installation of. Installation of package ‘GenomeInfoDb’ had non-zero exit status Installation of package ‘httr’ had non-zero exit status Installation of package ‘openssl’ had non-zero exit status Installation of package ‘RCurl’ had non-zero exit status Installation of package ‘XML’ had non-zero exit status Installation of package ‘curl’ had non-zero exit status But I got the following warning messages: > warnings() => ERROR: A failure occurred in build().I'm trying to install Deseq2 in my Linux computer. To change option values, run "meson configure" instead.Ī2x: ERROR: "xmllint" -nonet -noout -valid "/home/richard/pamac-aur/pamac-aur/src/pamac-b7837bb4fd517e0288e744af0ef773b325128196/builddir/data/doc/nf.5.xml" returned non-zero exit status 4Ī2x: ERROR: "xmllint" -nonet -noout -valid "/home/richard/pamac-aur/pamac-aur/src/pamac-b7837bb4fd517e0288e744af0ef773b325128196/builddir/data/doc/pamac.8.xml" returned non-zero exit status 4 Using the same options as passed when configuring the build. If build failures persist, run "meson setup -wipe" to rebuild from scratch If ninja fails, run "ninja reconfigure" or "meson -reconfigure" ninja) and Meson will regenerate as necessary. => Validating source files with sha256sums. => ERROR: Could not resolve all dependencies.Īfter installing libpamac-aur… => Making package: pamac-aur 10.1.3-1 (za 10:58:11 CEST) => ERROR: 'pacman' failed to install missing dependencies. => FOUT: Er is een fout opgetreden in build().Īfter my attempt I get this… $ makepkg -si src/tray-gtk.vala:26.22-26.35: warning: `Gtk.StatusIcon' has been deprecated since 3.14 Ive looked through every page online and have updated Rstudio () and my Mac to Big Sur (11.0.1) and neither have helped. Hello, Ive been getting errors every time I try and install any packages into R. src/tray-gtk.vala:23.3-23.28: warning: `Gtk.StatusIcon' has been deprecated since 3.14 Installation of package had non-zero exit status. data/doc/pamac.8.asciidocĪ2x: ERROR: "xmllint" -nonet -noout -valid "/home/richard/.cache/yay/pamac-aur-git/src/pamac/builddir/data/doc/pamac.8.xml" returned non-zero exit status 4 Generating pamac.8 manpage with a custom command data/doc/nf.5.asciidocĪ2x: ERROR: "xmllint" -nonet -noout -valid "/home/richard/.cache/yay/pamac-aur-git/src/pamac/builddir/data/doc/nf.5.xml" returned non-zero exit status 4 The problem is related to the use of the shared library libcurl. Generating nf.5 manpage with a custom command 13 Issue Unable to install a few R packages (statistical programming language) since updating from 16.04 to Ubuntu 18.04. I tried building with pikaur and now with yay.
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